Below are some example Python scripts to generate volumes of regions within the released datasets of the fragment of the human cerebral cortex. The published article describing the data can be found here: https://www.science.org/doi/10.1126/science.adk4858 The released dataset is listed here: https://h01-release.storage.googleapis.com/data.html The script below prints out the header information of the data. Now, use the […]

ScanXm has received a major update where it can now load and play time-series data, including video. Of course, you can also use all the standard tools in ScanXm to do the annotations and export them either as a 4D volume or as individual frames. ScanXm is compatible with MONAI Label and is able to […]

ScanXm now seamlessly integrates with MONAI Label! With this integration, you can tap into the power of the MONAI Label and MONAI Model Zoo and use state-of-the-art models such as a whole-body CT segmentation of 104 tissues trained on the TotalSegmentator Dataset. Check out the instructions here: https://scanxm.com/monai/ Download ScanXm at https://scanxm.com/scanxm and try it […]

Not only can ScanXm do realistic volume rendering, it also implements the latest surface rendering techniques from the VTK library to enhance the realism of your segmented objects. These include: · Physically based rendering parameters, which ensures the realism of the surface material and how the light interacts with it. · Ambient occlusion, which is […]

Thanks to the incredible work of the software developers at Kitware, I am now able to provide cinematic rendering in ScanXm. The same level of realism as Siemens, but entirely free! Just click on the cinematic rendering checkbox in the View panel, and you’re off. Download ScanXm at https://scanxm.com/ The volume you see here was […]

ScanXm is no longer exclusively for medical imaging! It now includes a volume rendering setting for fossil CT scans, as demonstrated by this stunning specimen of the Pseudotherium argentinus. I believe this will benefit paleontologists, as well as other researchers and enthusiasts, by assisting them in their analyses and visualizations. Dive into the world of […]

I’m excited to announce the latest release of ScanXm, version 1.0.3, which includes the automatic segmentation of the vertebrae in CT scans! 🎉 I’d like to extend a big thank you to everyone who provided feedback on ScanXm. I’m especially grateful to those who reported bugs. With your help, ScanXm has become even better. The […]

It is my great pleasure to announce the public release of ScanXm. ScanXm is a Windows application for the visualization, annotation and segmentation of biomedical images. ScanXm provides the tools for the manual annotation of biomedical images, as well as AI tools for the automatic segmentation of various organs and tissue types. It requires no […]